Publications
AI Research
The Blessing of Dimensionality in LLM Fine-tuning: A Variance-Curvature Perspective Qiyao Liang, Jinyeop Song, Yizhou Liu, Jeff Gore, Ila R. Fiete, Risto Miikkulainen, Xin Qiu Submitted (2026) arXiv
Efficient and Transferable Agentic Knowledge Graph RAG via Reinforcement Learning Jinyeop Song, Shuo Wang, Julian Shun, Yada Zhu Under Review (2025) PDF
Context to Concept: Concept Encoding in In-context Learning Jinyeop Song, Sumin Han, P. Argawal, Jeffrey Gore ICML 2025 Spotlight (Top 2.5%) arXiv
When Do LLMs Improve Bayesian Optimization? A Systematic Comparison Across Molecular and Protein Design M. Akke, S. Yang, J. Ruža, Jinyeop Song, E. Pan, Rafael Gómez-Bombarelli NeurIPS 2025 AI4Science Workshop
Probing the Embedding Space of Protein Foundation Models through Intrinsic Dimension Analysis Seungwoo Yang, Jiho Nam, Tomas Perez, Jinyeop Song, Xiao Du, Rafael Gomez-Bombarelli NeurIPS 2025 AIDrugX Workshop
Estimating Empowerment of Language Model Agents Jinyeop Song, Jeff Gore, Max Kleiman-Weiner arXiv preprint (2025) arXiv
When AI Co-Scientists Fail: SPOT - Benchmark for Automated Verification of Scientific Research G. Son, J. Hong, H. Fan, H. Nam, H. Ko, S. Lim, Jinyeop Song, et al. arXiv preprint (2025) arXiv
MethylGPT: Foundational GPT-like Model for Human Methylation Data Alex Ying, Jinyeop Song, Haoran Cui, et al. Under review in Nature Methods (2024) bioRxiv
Reconciling Kaplan and Chinchilla Scaling Laws Tim Pearce, Jinyeop Song TMLR 2024 arXiv
A Resource Model for Neural Scaling Law Jinyeop Song, Ziming Liu, Max Tegmark, Jeff Gore ICLR 2024 BGPT Workshop arXiv
Biophysics Research
Interspecies Interactions Drive Community-level Selection in Microbial Coalescence Jinyeop Song, Jiliang Hu, Jeff Gore bioRxiv (2026) bioRxiv
Transition from Global Stability to Multiple Attractors in Microcosms Jeff Gore, Jiliang Hu, You He, Matthieu Barbier, Jinyeop Song, Guy Bunin Under Review at Nature Portfolio (2025) Research Square
Noncovalent Antibody Catenation on a Target Surface Greatly Increases the Antigen-Binding Avidity Jinyeop Song, Bo-Seong Jeong, Seong-Woo Kim, et al. eLife 2023, 12, e81646 DOI
Rapid and Label-Free Identification of Individual Bacterial Pathogens Exploiting Three-Dimensional Quantitative Phase Imaging and Deep Learning Geon Kim, Daewoong Ahn, Minhee Kang, Y. Jo, Donghun Ryu, Hyeonjung Kim, Jinyeop Song, et al. Light: Science & Applications 2022 DOI
Deep-Learning Based Three-Dimensional Label-Free Tracking and Analysis of Immunological Synapses of CAR-T Cells Moosung Lee, Young-Ho Lee, Jinyeop Song, Geon Kim, YoungJu Jo, HyunSeok Min, Chan Hyuk Kim, YongKeun Park eLife 2020, 9, e49023 DOI
